NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182024_10000043

Scaffold Ga0182024_10000043


Overview

Basic Information
Taxon OID3300014501 Open in IMG/M
Scaffold IDGa0182024_10000043 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)216660
Total Scaffold Genes201 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)137 (68.16%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002976Metagenome / Metatranscriptome516Y
F047625Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0182024_10000043200F047625N/AMQMDAEDRAQHRQLQKEYGSLYRSVSDILFQHNVMDLDGKHNTGDYDPEVDVLLLRIGEAVDCESLKGILYQVFRNAFGAENCGTPDRYDGAAAEIWKAYERHRNK*
Ga0182024_100000435F002976GAGMSPKRSVAKTVVKRTSARRSRLSRAPAKIPRLLFLLAAFAGFAAVALQARFTVTLQSPLRMRLQWPLVIAPRVSTDDTVGAQADQSGHRLTAYQQYACNKFGPACRVALAVERAENPRGACEIYHYNTDGTLDWGYFQINTVHLKRAGVNLRDLLDCKANIDFAYQLYRERGFEPWTTYTSGLYRNYLRDP*
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