NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182019_11196153

Scaffold Ga0182019_11196153


Overview

Basic Information
Taxon OID3300014498 Open in IMG/M
Scaffold IDGa0182019_11196153 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)558
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029406Metagenome / Metatranscriptome188Y
F084577Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0182019_111961531F029406AGGAGMTTVAYLANQFPSPVEPYVMDEITELRRSGVKVICCSGKRVSPKDLSLAERAFWKETRYFQPLYDDELIRALRRLASDRSSLWQILRPVLFERGASPLRRIRTLGHTI
Ga0182019_111961532F084577N/AFLFFNLFRLSRRGPPGESGPVASLRRVWPILLCVYLFNAFFVDMAYQFLIGLVFTIAGILCVSVPETKPATRKESAE*

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