| Basic Information | |
|---|---|
| Taxon OID | 3300014496 Open in IMG/M |
| Scaffold ID | Ga0182011_10000626 Open in IMG/M |
| Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 30900 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (80.77%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Stordalen | |||||||
| Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F030957 | Metagenome | 183 | N |
| F042703 | Metagenome / Metatranscriptome | 157 | N |
| F094792 | Metagenome | 105 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0182011_1000062612 | F030957 | GAG | MNTSTQIQPVNSLTYADAVGLNVGLTRMQGEDSVAFLERCYLSTTCRQDSTYEGEQDQVCLQLGLSQWAGISISSTDSSMTITVCIGLVTVVQNGVTHTIPTVTMAPDDYWVWRMISDVVNDLNVITGVTAVLAGPDGPALQIAKQSNLFTVPSEAITMTDQLLANPNVIASSLTFSLAPGSYVFNPQTGELIFSGTLPPGLSVAYQYIAMPYNLVCSELGLFGLVEPSLARVGVSSDNVLAYQLREVVQAVMNADPSYWAQ* |
| Ga0182011_1000062617 | F042703 | GAG | MKPDTSTPNPVHLAIVSPCSSCQNQLTVSQNGMPACPRRVAQQNIQYMQSVGIDTTGVQHLALYGTEGTSQAGNGSYLNPVYSDNLHAILIWIALLEDNGGVLDSQGNELCPNLLDPSFNTSYIQCHSLPVTTRDNEAVYFQKGAFAANDQLEVTLSARQQMSTDGSALPVLIDGFAQKVNFIFNHPRTPLSKDLCPAGT* |
| Ga0182011_100006269 | F094792 | GGAG | MPPIGIQTFYYGKKLPARAIAIAQVTAEDVSPADLIDIVNTPYLPGSLGIWTLTSGLAASPNFTAPDYNQSVTITGDIAYLVQNQFFQITSQFAADGVTPLYFYHNFGQSVSGATILNLDGSVFTPAPTVLFNGNYMYHDVPSTAPYQVRYVDSAGRVQISLLHYNQVMPLSTNGDTSKGYAFMGGVIEVASNTASYAIRFLTQNGYQVLPPYEAPSYLPWFPRVRFSLQPPALEYPIQSFLPTRPYLLGYWIPGTVLGPNLIQFDRPQIYNDPNHLPDIVVFDSNQNVKYAMDGSANGEPETHGTLYPWKRNQISDVDPFMGRVEVVPTVDTTDTVYGFYSYFEPDVVYTALDVNPVTNPSIKNTVICFYYRAASNPLQEIYHQVFNETGPIAGMTNDPNPPTWTGQVPSSGTVIAEMVVGVSFGIATFEMTDARTRGGGLAPAYQTIPQADNFWDLGYLDGRPYPVGGALVVYLPTRILNTMTHAVVAGIVNSVLPMGTIAAIRYYDPEGNESV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |