NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0182017_10000001

Scaffold Ga0182017_10000001


Overview

Basic Information
Taxon OID3300014494 Open in IMG/M
Scaffold IDGa0182017_10000001 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)348923
Total Scaffold Genes508 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (8.07%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011397Metagenome / Metatranscriptome291Y
F020177Metagenome / Metatranscriptome225Y
F022996Metagenome212Y
F038463Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0182017_10000001344F011397N/AMKDFELLKRTYPVSKCERFCDGYEFIMKNSTSKERKEWNINEKELQQVIKEGEKYIYQVAKEGKEFKVMCLCFNNYEIIRKNIFKFDDD*
Ga0182017_10000001349F022996N/AMETIIKINILKMKEDIKAKVELQKFYKNQRKTVKIVGERKMPASEAWYKHYTNREDLRILYAAYGIARGKSFSQIENHYPEDNHPLQKYQKAIDRILEPYMYLEEVPVLE*
Ga0182017_10000001352F020177GGAMDALKGKLILKYKYNMDNIEVIDLNNTYWDRLKGFATELRIDARWILRNNDTKKPYGSLRIASHPDLPPGYLRAIFTYVTKIKPKNKEEKMKTVEDFQMKITELEVYSISDEIKTEQKKYEAPYKELEGMFGVKIFE*
Ga0182017_10000001388F038463N/AMSYLILPRRVFNSPLIEYANFKNGSFVNLIRLNKPYKNGISYAVYETTKNPFCSNGLYKTFDKAKIKFDLMVKNGSQDSELIEHNKTNNF*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.