| Basic Information | |
|---|---|
| Taxon OID | 3300014493 Open in IMG/M |
| Scaffold ID | Ga0182016_10130526 Open in IMG/M |
| Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1723 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Stordalen | |||||||
| Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000830 | Metagenome / Metatranscriptome | 872 | Y |
| F001497 | Metagenome / Metatranscriptome | 683 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0182016_101305262 | F000830 | N/A | MSKSAGEIGHLRDEELPAVRVIVPPDLGGRVFEDDLDPGDVVFDGNLTAMLIWHERYPLGRGWRSGWVLSYDTDGKGNPDDYIVGLSLADVDAAVAEARDYLRSVGYPAHGWLLS* |
| Ga0182016_101305263 | F001497 | GGAGG | VADYPERWRSPFTQVEMREMWTYSDGVRTAKAYWWPSGAVGAGSWVLVDQGTGNVQGVVRAGEFSRRFRPVDVFADVPALPAYLGTVTTPDGTALVDLVLDRNPFMLANGPRRAARPHALLVPRSHRDGWSSATASELAACQTAMTLVAGWYRSLDGG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |