| Basic Information | |
|---|---|
| Taxon OID | 3300014493 Open in IMG/M |
| Scaffold ID | Ga0182016_10000229 Open in IMG/M |
| Source Dataset Name | Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 69378 |
| Total Scaffold Genes | 71 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (32.39%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Stordalen | |||||||
| Coordinates | Lat. (o) | 68.35 | Long. (o) | 19.05 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006076 | Metagenome | 382 | Y |
| F041735 | Metagenome / Metatranscriptome | 159 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0182016_100002294 | F041735 | N/A | METRELLARWQVLLNEPGNAIALRGVLQERLNILHRLNELGARHIEGLSIVKALEVTNASMSAINRASSL* |
| Ga0182016_1000022966 | F006076 | N/A | MDELISSLVPPKQQAAAQRLLDDPGSRHLIRQQLSRLADDHAGLVPQNSFSWILCKLTTFGAEETDTLRIYQAFLSQLNQLGQMCRILAGDGEHCKYDSPAAIANRITIGLGLFYEQAARRHQRHAAPSPHFYQQMAINCFAVTGYKTIATQLPEWLEFLRTNFVSPRP* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |