NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182013_10048011

Scaffold Ga0182013_10048011


Overview

Basic Information
Taxon OID3300014492 Open in IMG/M
Scaffold IDGa0182013_10048011 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3287
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006481Metagenome / Metatranscriptome372Y
F020609Metagenome / Metatranscriptome223Y

Sequences

Protein IDFamilyRBSSequence
Ga0182013_100480113F020609N/ALQQAAGLGFQAEALGFDLLIAQLVRDRILEPIISSPFHFQIRRWNWTNPDSVYAADDRLSLIAISRKEQTARFRMVGLLSARISNPRLPEKRVQQIRKERDELERIYEATWLELENAIGSKAAEAIRKSVEETTEAGAVQLELPLEKKRNFDLEGEAKCNQ*
Ga0182013_100480114F006481GGTGGMVAAPASSEAQLPSRVLEIRPEESKLVCVGVDGREFALSRLIGSNVRVGDELLAPASAGTAIADTEVYIRKPSLRRADVYQVKAGYAALPKMDKREEPFVRVQVAEGQLGINVIHIPCHVIRDYFFAANRRASWPSQPTFYYVLRLPQDVTYKELRLAYRLRRLEFQKQNASKAELAMIERAYNMLADPDIRGVYDALIKDSAIPVPFPYSGFGSLLVQGERSAESGVFFANRILAFMPERRHRTVPVPLRKLDYFE
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