NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182013_10002800

Scaffold Ga0182013_10002800


Overview

Basic Information
Taxon OID3300014492 Open in IMG/M
Scaffold IDGa0182013_10002800 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22464
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (58.82%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015956Metagenome / Metatranscriptome250Y
F019749Metagenome228Y

Sequences

Protein IDFamilyRBSSequence
Ga0182013_100028006F019749GGAGGMHAQEGAQSKRSSADECQPDRPPKKRGDLAAKLNPLLKPRLSPGQPGRPKGASNYEWTPETDRLLGDLCAKWGAAKAKNIIGRKLQEGRPPTEAAPRPDSVRKAVERRMAKLGISTGQKRRKPEGRKVKRWTEAQTTALLGALGADATIESIALRTGHTVKSVCAKLARLDYSVHEIHGFAAFTANSLAALLGVAPRRIRRWKERGWLETKDRRITEKCLGRFLRAHPDRIPFNSLRREDQVYLVDLGFPSPEATTFKKNVRDILDGIGRQRKPRRPVRRSSAGAMDFGQGAETPGDDDEATFIVGTSG*
Ga0182013_100028007F015956N/AMPVKQNQRGEIMDRVRQQTERCALEQGKLVPWKRLAEAADEYTDWQVFALWSRAVVETAGSIPAVVEQEMRSRTPRLLGRARRDVAADAKNGDGPGARIWQDVSRWVETNIFVVAKRAGWLDAVRYYSSMSLRSMKAWSHWEDIDQQWRAATPKQFPPFAQWQCEVAAVARLSNSASPAQEVLDAVRRISDAEWNKLLHSFSDLITFSLWMELVLDIEGPTSALVSKELADRYSGFSFSSALGSKAAVRALNDWALDHVLAIADQKQLLAALSFHVTHYPAYPAMRSYALHCHEAWPAEYPDHLPTFEEWRKAADAHFEE*
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