NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182013_10000948

Scaffold Ga0182013_10000948


Overview

Basic Information
Taxon OID3300014492 Open in IMG/M
Scaffold IDGa0182013_10000948 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40216
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (53.66%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001107Metagenome / Metatranscriptome776Y
F003428Metagenome / Metatranscriptome487Y
F068890Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0182013_1000094813F068890GGAGLFSNTQSSNAYFETTRSAIMVACILAFEVKVEKKEELVKVLKDQVLPILKQQVGFLEILPFFHEKVTEEKVFTITLWTTRRDAERYEGEFHPKVLDILTPCLTTPVEVSYSNLETALCDRFVDALAV*
Ga0182013_1000094825F001107N/AMGQFHGWPGVSLRTLHALAVGILPAMFLLRSTREEVYNILWILVFGFATINILSLGARRFEREKQGLSFGEILAIMVVLVSIVLLGWEMLYLFHILPIRITPV*
Ga0182013_1000094834F003428N/AMAESECTIYRKLKERETRAHAAWTSFLYRNEVKPKLSEKAKRKHQKEEMEEYQQAHKARLAHAKICPACSK*
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