NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182013_10000062

Scaffold Ga0182013_10000062


Overview

Basic Information
Taxon OID3300014492 Open in IMG/M
Scaffold IDGa0182013_10000062 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)121841
Total Scaffold Genes111 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)65 (58.56%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000688Metagenome / Metatranscriptome937Y
F000987Metagenome / Metatranscriptome813Y
F001371Metagenome / Metatranscriptome712Y
F001591Metagenome / Metatranscriptome667Y
F089726Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0182013_10000062100F001371N/AMSTRSEASVRKATDSDLEIGLVCADRDGNRIRIDRVDRQAARLSYHFLNDELRVQEGIQERSIEQFLAQGWYTAALGKSL*
Ga0182013_10000062103F000688N/AMTHFPHANVNQRSPRVQLHGSVAAAVLAEGGHRSRAKLQSISVNGGLLQLQQELSTGDFVEIAFHTRSGAIHGMAEMLHPTGKFQSACFQPFRFIALADDDHRKLRMALDSALDRSFLDPVSEQLQTPPGF*
Ga0182013_1000006255F089726N/AMSDEKVDLLCEHCGQAFSAFLHEMADHNAKVTSCPNCGKPNDCKPAKGPKSAASVRGKSGL*
Ga0182013_1000006257F001591GGAMIRLSSSTAIKSKIQAGLGAKVDRRRERRLKLELPVRIWGVDKMARPFAELVRVRNVSNGGAVLVGVRSKVQEGEVLDVQHGASRAQFRIVWLNLSGEAGIQALAFEPPILGIGLPKAFAMVGTG*
Ga0182013_1000006296F000987AGGAGMSIQEVSAEQLAELFHHYHQALGPDFGFTTQATAESWEQISQQERKRMVEAARMAMLEVAGAPRAEEHSRRYFAKPGEAEWGC*
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