NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182010_10303589

Scaffold Ga0182010_10303589


Overview

Basic Information
Taxon OID3300014490 Open in IMG/M
Scaffold IDGa0182010_10303589 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)857
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002420Metagenome / Metatranscriptome560Y
F062385Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0182010_103035891F062385AGGAMGYQAKKLPNATSSDMTGQKNVSVPKMDREVATKSMTGATPPKGALSSDTSGERKRPIEGGVGMGKMDGIGSRDTKHMGMHDGRMGEMKG
Ga0182010_103035893F002420GAGGMTFRETTIKYIKDILRAKTISEVIYAELQEAHLRKLEAETAAEYAHATMQYNERRIQRLERRLFEHKEEDA*

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