NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182010_10019284

Scaffold Ga0182010_10019284


Overview

Basic Information
Taxon OID3300014490 Open in IMG/M
Scaffold IDGa0182010_10019284 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3101
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023003Metagenome212N
F025185Metagenome203Y
F079371Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0182010_100192845F079371N/AVTRLARLVRVVTLPETRGVIVAAANSKTLRDMRRRAVHDRGALVRDLRNPANARDLVRDAARHPAIRELASAGLMFLPLRYLPVGWAATWVAHRVVGHPLDLPAEVPDDSSFAATRRTKNATAAGPGA*
Ga0182010_100192846F025185AGGAGGMHVEELPSVKEVVSTLEEARQRVSEADLVGASRSALTSAREAVADGWPRRRRASRWPWVAGAILGMTVLVVLLTPACRRWAASRRASGGPDGGMGDGTPVPAMSAADETRDLAYPAEPDATDTAPLVNGGTE*
Ga0182010_100192847F023003AGGAGMAKNQTHKIDADDVVDDVPDRADMGELADTVVDRGRAVLDQFPAVADSARGVLAGAQDQVNGLSDTGIVAASGFALGVSSGLLLAGAPRAILILSMIPVALTLRSAFARGMRPARLIN*
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