NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182018_10008234

Scaffold Ga0182018_10008234


Overview

Basic Information
Taxon OID3300014489 Open in IMG/M
Scaffold IDGa0182018_10008234 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7846
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. KRR8(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036809Metagenome169Y
F044611Metagenome154Y
F077551Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0182018_100082343F036809GGAGMASATIDSRRPCPKVCILNEDDARSLTYGGIAHKCSSRRHHHYSKNKADALVKAGELVWLGKHKKVATFLNARSWIKTYRRNRYGEVLTCGMQLVRGGGGF*
Ga0182018_100082345F077551GGAGMSDEPSPSEFLISKMEGMDDVTQILIVTRTGEGEISYDSCGQIAADTLGMIEFVRVAAAEHLRRELYGEDED*
Ga0182018_100082348F044611GGAGGVTTVSNTDDNAEERGAYEQIFAEVRNLSDLRHAIARAVRQLREAMEKEDNRAVAAAHVRNLTEIDPKALAQAYALAERTCTYWPSPGQIRELAGWSEETRGGAGLQWVFRYLERHGVEGRVRGGGVKFGEDETGRRVLLETEAVVAAPDIPAEIEHTLKLLGSGSAKQGFSYVSQHPFVKGWGDFAGDAGSRTAERIEGQWIRCYRLVVRKTQQTQAGGEP*
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