NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0135128_10069

Scaffold Ga0135128_10069


Overview

Basic Information
Taxon OID3300014236 Open in IMG/M
Scaffold IDGa0135128_10069 Open in IMG/M
Source Dataset NameIndoor hospital air microbial communities from San Diego, USA - 176_L1_2014-5-5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSan Diego State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)927
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fagales → Fagaceae → Castanea → Castanea mollissima(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Air → Indoor Air → Unclassified → Unclassified → Indoor Hospital Air → Indoor Hospital Air Microbial Communities From San Diego, Usa

Source Dataset Sampling Location
Location NameUSA: San Diego, California
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049431Metagenome / Metatranscriptome146N

Sequences

Protein IDFamilyRBSSequence
Ga0135128_100691F049431N/AVTILSPSAEAHERTPRRRPGCTGRKGRRRSEPQPQASQVCETPEPQATDSIAPTEFPKLRSATGGIRLLHRSLHRYIRPSGGEDSRQVNAQARVLDRAIPEDLVKRLAKPVIHRPQMLPANRETNRTSVPSTSTLRLPEGRQHRASRKESPSPK*
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