| Basic Information | |
|---|---|
| Taxon OID | 3300014208 Open in IMG/M |
| Scaffold ID | Ga0172379_10007859 Open in IMG/M |
| Source Dataset Name | Groundwater microbial communities from an aquifer near a municipal landfill in Southern Ontario, Canada - Groundwater well OW334 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13684 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (47.06%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Ontario | |||||||
| Coordinates | Lat. (o) | 43.442 | Long. (o) | -80.577 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F036462 | Metagenome / Metatranscriptome | 170 | Y |
| F042051 | Metagenome / Metatranscriptome | 159 | Y |
| F042607 | Metagenome | 158 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0172379_100078594 | F042051 | AGGAG | MTNTFGEVSWNDDVYAGSEKKNSKDLFLRLDEGSNEMRLVTQPFQYLVHKYKKEGDPGFGQKVSCSAVHGSCPLCLIGDKAKPRWLLGVISRKTGKYQILDISFAVFSQIRKYARNTARWGDPTKYDIDIVVDKNGGATGYYAVQPIPKEPLSASDQQIKDSVDFEDLKRRVTPPTPEMVQKRIDKINGVTGDAAAAEAVPETKTGKGRSAPKTTAAPVSMTDEEDESFPAYEGEQKNV* |
| Ga0172379_100078598 | F036462 | GAGG | MDKVSLKDFLGDQLEEDFLEFDLTNIQEVLEALAEESAHDLAHAEFLQQKALRGADILSEYLCKIVKTVSYLETKINSTKNKVSLEYMAPEGRTTSEMKKWAGESSPIVEELQIRLAKAKASKMVLEKKYDILIKSHHHFKDIASGIRKTILGYNSGTTEKVPDGYE* |
| Ga0172379_100078599 | F042607 | GGAG | MPLRVIDNKRVDLTYAEDQMYQKIVASYTSLTNKGEDLFIDLFETDENGIIIFLKPPSKRQTSFEVFLFLMAIMQQQHIRLMYKQVETLCAEIREKNKDK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |