NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0172380_10000029

Scaffold Ga0172380_10000029


Overview

Basic Information
Taxon OID3300014205 Open in IMG/M
Scaffold IDGa0172380_10000029 Open in IMG/M
Source Dataset NameLeachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 162 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)316285
Total Scaffold Genes466 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)80 (17.17%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)43.442Long. (o)-80.577Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011397Metagenome / Metatranscriptome291Y
F020177Metagenome / Metatranscriptome225Y
F022996Metagenome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0172380_10000029405F020177N/AMDNIDLNNTHWDRLKGYVTELRVDARWLLRQDNTDKPLGSLRIVSHPDLQPGYLRAFFTYVTSIRKKTREEKIRTIEDYQMEIGELEVYSIGEDIKTENLKHEASLKDLEEMFNVKIFE*
Ga0172380_10000029408F022996N/AMETIVEINISKMKADIKENAEKQKFYRNQRKTEKLVGERQMPAWEATYSHQKNRRNLRIMYAAYGLAKGKNFSQIENHYPEENHPLNELRYEIDKMMNEYKAKDGE*
Ga0172380_10000029414F011397N/AMPKDFELLKRTYPVSEFDRFCDGYDYIMANSTPEERKEWGIKEDELERVIKEGEKYIYQVATEGEEFKTMCLCFKNYEIIRKKIFKLEDD*
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