| Basic Information | |
|---|---|
| Taxon OID | 3300014201 Open in IMG/M |
| Scaffold ID | Ga0181537_10000112 Open in IMG/M |
| Source Dataset Name | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 69879 |
| Total Scaffold Genes | 74 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 40 (54.05%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 47.1149 | Long. (o) | -88.5476 | Alt. (m) | Depth (m) | .1 to .2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000512 | Metagenome / Metatranscriptome | 1064 | Y |
| F000696 | Metagenome / Metatranscriptome | 931 | Y |
| F000885 | Metagenome / Metatranscriptome | 849 | Y |
| F001959 | Metagenome / Metatranscriptome | 611 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181537_1000011232 | F000885 | AGGAG | MSTAPSSSTSTGTSTHLEFVGMIVEISGIAAVVGGVVLSLHHWPTAAALIGGGVAFYVGKKLRSMA* |
| Ga0181537_1000011243 | F000512 | N/A | MERHRHSKGKPTPRIAILRETHDTPPQVAARMAHAGGFNRYGEPNYRAIWGWNRLAWIGGKFTDRDERGDLLREVVELRREPKYPAVNRWHIERWMPPESYGSPRQWYAQSIERENGISVPALGPYPSRGDYEHCFTLEDPQGGFLQLTTAAAEHIAHAIEYARKSPRPAGKRRLNDRQQREEAAYDQYAYDVLDDAVPAFHQQPFVTVL* |
| Ga0181537_1000011245 | F000696 | AGGA | MPVVGSSAYNTAGQITALVRSLLNDAAGNLFTDTVLLPYANSAYRKVQRALGNAGGGGFIQDDALLVVTAITAVDASLQVSITDATAPPNQLPTDLLVPVKIWERPNLSTDDFTEMVDVSQHGGLPSREQDTTLSIWEWRADGLYFLGATQDTQIRLRYSKAFPDFTDSTSPVLIRNAQEAIAYATAALAGWARGSPLSERWDEAASDALEDLVAAAVRREQNSQRRRRPFSWRTGYTPF |
| Ga0181537_1000011272 | F001959 | GGAG | MKNLNSVFAAYLIAWGIFFVYYLTVARRAAALREELEKLKNSLARNK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |