NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181523_10102232

Scaffold Ga0181523_10102232


Overview

Basic Information
Taxon OID3300014165 Open in IMG/M
Scaffold IDGa0181523_10102232 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1720
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006481Metagenome / Metatranscriptome372Y
F020609Metagenome / Metatranscriptome223Y
F074485Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0181523_101022321F006481GGTGGMVAAPASSEAQLPSRVLEIRPEESKLVCVGADGREFALSRLIGSNVRVGDELLAPASAGTAIADTEIYIRKPSLRRADVYQVKAGYAALPKMDKREEPFVRVQVAEGQLGINAIHIPCHVIRDYFFAANRRASWPSQPTFYYVLRLPQDVTYKELRLAYRLRRLEFQKQNASKAELAMIERAYNMLADPDIRGVYDALIKDSAIPVPFPYSGFGSLLVQGERSAESGVFFANRILAFMPERRRRTVPVPLRKLDYFEDYAILRDRHRKLEVLIDH
Ga0181523_101022322F020609N/ALQQAAGLGFQAETLGFDLLIAQLVRDRILEPIVSSPFHFQIRRWNWTNPESVYAADDRLSLIAISREEQTARFRMVGLLSARISNPRLPEKRVQQIRKERDELERIYEATWLELENAIGSKAAEAIRKSVEETTEAGAVQLELPLEKKRNVDLKGEAKCNQ*
Ga0181523_101022323F074485AGGAGMQPVNGVDQAHDAATISSPPTEHSDDLPQLPEDLKVKLKEPLPREAVSPNPQ
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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