NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181518_10011004

Scaffold Ga0181518_10011004


Overview

Basic Information
Taxon OID3300014156 Open in IMG/M
Scaffold IDGa0181518_10011004 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6943
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).6 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008672Metagenome329Y
F010661Metagenome300Y
F083583Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0181518_1001100410F010661AGGMTTRNEIATAADFRKLAQESAFEEARRVVLPVSGYAVMLRRPTKFYWALRRSGWPAELREKLDLVGVGVRTVLTAEETLLLVREDRQMLSEAFVDPKPSLEPGASQFDPNWLPKEDADFTLKYLRGQVLANGQDLESFRRGKPEHIEGSGCNGPDVRQNTE*
Ga0181518_100110042F083583GGAGGMSDITAIDQSYHLNYNIEIGKFTCLAADTTVSADGCNVPSGANGAFLGVAQESILPDAMADYSGGVYTLTSGTAWPANSIPGSGLGRNIRTRIFGISRVVASGAISRNAYVNIANAQGQVKAVSEAVGTYINVVGIAIDAAVNAGDVIRVLVMPFTYKM*
Ga0181518_100110047F008672GAGMWISYYNAGLSKQVIRQLLAVINRDIQAALDFVSGAPGTYAPFAEYDLALLPVQQFPALLLTPDTVAVDGQANFTLHQSMRLTCVITVTHQDRNALAELIQDYVRSVRAVLDSLWELTPGDFLLTSLPLPSPPFPQGALSPGLANGKLTGLFAERHTFEEIRRAPQSGFAMAATMSILAEIEET*
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