NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134081_10251753

Scaffold Ga0134081_10251753


Overview

Basic Information
Taxon OID3300014150 Open in IMG/M
Scaffold IDGa0134081_10251753 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)618
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007884Metagenome / Metatranscriptome343Y
F009247Metagenome / Metatranscriptome321Y

Sequences

Protein IDFamilyRBSSequence
Ga0134081_102517531F009247GAGVKQHLGRQSGVQNVEVSLRDGKVDVTPKQDGRIDPAQLLKATYDSGVSVAELDMT
Ga0134081_102517533F007884N/ADAESRFWLSYRPYESTNVAREWFIGPVFTWMHSQNDRVVNVTQNGSGGDLLLAGVTTYVGLRPGMHVWIGADWDVAHSSGEQFMPIRRHISFGITQQFRMHL*

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