| Basic Information | |
|---|---|
| Taxon OID | 3300014056 Open in IMG/M |
| Scaffold ID | Ga0120125_1116382 Open in IMG/M |
| Source Dataset Name | Permafrost microbial communities from Nunavut, Canada - A20_5cm_0M |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Tennessee |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 634 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Axel Heiberg Island, Nunavut | |||||||
| Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | .05 | Location on Map | ||
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000280 | Metagenome / Metatranscriptome | 1383 | Y |
| F019580 | Metagenome / Metatranscriptome | 229 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0120125_11163821 | F000280 | N/A | AQNQDDQPRPARPLVGYRDVGEDIRHGRSALTRAWIVLAILIVIYLAWTLTVYFLEPGLR |
| Ga0120125_11163822 | F019580 | AGGCGG | VYLKHLSSLQFLTYVSFFAVVIAALFKFVPGRSPPVREEPYPEKELHAHDPKTAKYFLAGGFFLVLGALHMAVKNLPWLAEYLARTGYAGHLVRDLSNTHVMIVGGGTLLATGLCWLALPRIVGRPLASEGLAQGAFRFTVLGLAV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |