NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0177922_11155713

Scaffold Ga0177922_11155713


Overview

Basic Information
Taxon OID3300013372 Open in IMG/M
Scaffold IDGa0177922_11155713 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2980
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.844722Long. (o)-79.573889Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002357Metagenome / Metatranscriptome567Y
F007469Metagenome / Metatranscriptome350Y
F020681Metagenome / Metatranscriptome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0177922_111557132F020681GGAMKSLNVKYATHLYEGFMLQFQQFSKVLAGLVKMVNFRCNFCSANTEFEWLDGYPEADGFRVYQCLKCCAVGTKNIAEATDTQEPVMRCTKCGSWMFADKECHTCALIMTK*
Ga0177922_111557133F007469AGGAGGMGELQIIDGSGLTATFTDNAIKVEPSIVTCDLCNDDRLLHEGDLLRCYSCHAINRIPYHA
Ga0177922_111557134F002357GGAGGMAFNLEDYEDVATLNKWFISNYPMGRSDISVISHDAEKGYILVQATIWRDAKDTSPAVSNIAFGSRETYIPNMKKFYVEDTATSSLGRAIILLKGSDKTATKDDMRKVESNPSFKDKLESRQNMYGKAGSKSAQIETILRDSFAADKKKPEPVAWSVGDVVDQIGSSIPNEPPACQHGHILKEGISKGGKPYYGYVCKAKACEPKWAKLTANGKWYFEGGE*
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