Basic Information | |
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Taxon OID | 3300013126 Open in IMG/M |
Scaffold ID | Ga0172367_10001091 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 40761 |
Total Scaffold Genes | 45 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (24.44%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Democratic Republic of the Congo: South-Kivu | |||||||
Coordinates | Lat. (o) | -1.64 | Long. (o) | 29.05 | Alt. (m) | Depth (m) | 10 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002943 | Metagenome | 518 | Y |
F020695 | Metagenome | 222 | Y |
F023847 | Metagenome / Metatranscriptome | 208 | Y |
F029749 | Metagenome / Metatranscriptome | 187 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0172367_1000109113 | F023847 | N/A | MNVNKLKELVKEVMAEEQDYQKLFKHMLDKTGKSLKDMSDDDKKKFFNAVDKAHKAKTEGKLTGLPEELFGNQHKLDTDNDGEIEASDLAALRNKK* |
Ga0172367_1000109115 | F029749 | N/A | MGNYRIFDAQEYTAGQSGSLNKAWGVMRGSAVCSGSVVIEGVADGNYSGSIQQTGNHSTIKLEHLVVGQPIPMYVRSITVTTGSAYLLA* |
Ga0172367_100010912 | F020695 | AGGAG | MLKQFNSNARKLNRVIPAKVNPENLVNLDLTGSLENIELPTTNKFNSNTKSNPNPIKLVNNKNTITNFHTEILQNSARYISRGIDSFDNTGFGTLTINSASLDYGTEGASSDNFEVLVYGLHIPGDYQIVELNGNVNIILNADYIDFDNVTINDIYIIGKFK* |
Ga0172367_100010913 | F002943 | N/A | MKRSLLDITQKMFRKPGNAILTPKNLSDSTYWIYEATGWKFVDILREVEYRSEQDRLRVYINTQNISGTDYIVEQGNEGLLIKFIKNNFEYQLDSQDFIEIKGDIEQYA* |
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