Scaffold Ga0171652_1022903

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0171652_1022903

Scaffold Ga0171652_1022903

Overview

Basic Information
Taxon OID	3300013110 Open in IMG/M
Scaffold ID	Ga0171652_1022903 Open in IMG/M
Source Dataset Name	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 234m, 250-2.7um, replicate b
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Genomics Facility
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1807
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)		Depth (m)	234
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004102	Metagenome / Metatranscriptome	453	Y
F066856	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0171652_10229031	F004102	AGG	MGFVDTLKGIFQFRSKSFTESTVRPSIAQPYMATDTGAKLPIFPFPLIMIYELADNVDALRIPIETINREMFKNGFEIVEKWKFKCANCSKEFQYAPLAGDIRDEQPNSTNEDNESTIGSTTSSKANKPQFPVRQPKGNVLEGPLQCDTCGSNDLRRPTPENRQILEDMLHNPVNANEQSLEDIVRMLERDLEIADNAYLLVLKNYWIDDATGEIDHEKSEIKELIRVDPPQVAMIADSDGRVGYDDKHNPVFVCPKFEHRGKRLTGDRCDVCGTKALKAVVEVNSVYSIGIPQPKRVIYGEGEIIWRAGKYRPGLLYGYSPIYAVWSKVMSLSHMDEYIRKYFDKMRPPRGMLVIASRNYETFRKSWDALEQK
Ga0171652_10229033	F066856	AGG	MVELEIEDYSELFDWFTLCFGKKPEKITPQAKSTFWKLKFLSDDKIKEEDEIK

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