NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164313_10900449

Scaffold Ga0164313_10900449


Overview

Basic Information
Taxon OID3300013101 Open in IMG/M
Scaffold IDGa0164313_10900449 Open in IMG/M
Source Dataset NameSubseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay4, Core 4569-4, 0-3 cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)723
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Subseafloor Sediment Microbial Communities From Guaymas Basin, Gulf Of California, Mexico

Source Dataset Sampling Location
Location NameMexico: Gulf of California
CoordinatesLat. (o)27.0151Long. (o)-111.3798Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013467Metagenome271Y
F043619Metagenome156Y
F066274Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0164313_109004491F043619AGGAMIEEQYWKQTSGEVITVGDMNERHAKNVLRKMIKKSRQRGQDVLIVTYKLRLMRDKIGEIGNMLDEIKRDLL*
Ga0164313_109004492F013467GAGMTVELLKNWAWCEKCLEYKDADEVCFIGIEEDSVGKDLLHFLCDKCDLENINNIISSPTKPKGA*
Ga0164313_109004494F066274N/AMILELTREEIGWVKYALMRSSATLNGRDKEMTLKEERLLERIVKKIE
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