NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164293_10060339

Scaffold Ga0164293_10060339


Overview

Basic Information
Taxon OID3300013004 Open in IMG/M
Scaffold IDGa0164293_10060339 Open in IMG/M
Source Dataset NameEutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3019
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.099Long. (o)-89.405Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001182Metagenome755Y
F003407Metagenome / Metatranscriptome488Y
F015839Metagenome / Metatranscriptome251Y

Sequences

Protein IDFamilyRBSSequence
Ga0164293_100603394F003407AGGAMNQDLPPALEVCLDLVKDLLHPEVFGHAMPDEVKSRAFVVRAMLERLKARIEASDA*
Ga0164293_100603396F001182N/AMCVHANFITGEKMKPTPSCPRDLYQFDCDIEGVDLVCFLEYSPEEKGSTDSLGAPYEPDFEESMTLNNAYIAGTDVDIAHMLLQSLVDHIEISALEKFKDGDK*
Ga0164293_100603398F015839N/AMKTTTFTAFVASDMFNAGFACDGRPFIAEQFYVLIENAAGKRFRHQAIFNGTQQVICEETGDAFFPDLRAEASAKAERLAARVNAALEAGKFISPTFWDEIDPAYGSDEYVDQGTEAKRLFAEKAAA*
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