Basic Information | |
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Taxon OID | 3300013004 Open in IMG/M |
Scaffold ID | Ga0164293_10006032 Open in IMG/M |
Source Dataset Name | Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10309 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (71.43%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.099 | Long. (o) | -89.405 | Alt. (m) | Depth (m) | 7 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F022657 | Metagenome / Metatranscriptome | 213 | Y |
F030356 | Metagenome | 185 | Y |
F032141 | Metagenome | 180 | Y |
F041596 | Metagenome / Metatranscriptome | 159 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0164293_1000603211 | F030356 | AGGA | MLDIKNIPVDKINQNKKQNATFVRMKNQMDVKMASYLRYLGTKNAVNRASDYHYLVLAVTDSTAPVNGIDYIHPSVKPAVDYATAVITKGLIPNSEVNFEFVPDSEEDEAAARQATDMVSKVVNQMNEPHFIMERWVMDAAMHKNGMMMIKPVREPITRYVETAGTADELRAFEQQAAESGLTALRQSRRRTTVKMEQVLAEVQQLLGGLEEQSAQARVDAMMGRLGAAEEQDPDAMAAEEAELAQGQLEGEEEILSAAIARNTVYTAKYKLTGYNINIKFHPIAQHYWICDPTVPEMRDQPFCGYYDPMTIQEAMELYPGIVLDEFERFAEYNMNGAYQAGSVLNNLAIHARDSVPVMGIPVSSAASADPDSRQVSIVTVWNKYDIDGDGELELVELIYSGSYIISAREVEFIPVANMCPKPLPGNFYGMSIAESVIPMQEYATSAARAEIQLGLLTATPRLGVKPDKLDFEMLQDGEAAIFILDSKFDPATDVYQIPPPSGNLQFLEVAMQRIQQDTMSMIGMTTPADVFNPEVMAPGNSGIKLQMALTPNQIIQDNTVRNCAEGLKEALWLTWRTLIQYGDDYGVKKLAASCHPDRQPVFLDYLAWDDMNFCDRKQVHIELALGMMSEENALARTQIIQKCQQELYQTVQAMVQSGTLTPDMFKKVKKPFADTLYQLGVKDCDTYLPSDEEVVAMITAGQEAQKNREPSPDDKKKLADANLADVRARQIQAEVAGEDAESQLDFMSMAAGDPKVYS* |
Ga0164293_1000603214 | F022657 | AGGAG | MAEITTSQIGNGTTAYGADIVVKDLDLDVSNRVKDDTPVLNMCMSKKRKVNSTLPLWTDDIYRLP |
Ga0164293_100060323 | F032141 | AGGAG | MRISTKNMQSKPINQSRGPTTGNENTGTKRKDAMAEKARTGSEKSDLAKMVTDAVARRGELMRSVRDPAVEPVKAKVNVGRGPTKGNAGTQQKSSAARKGALGASSGY* |
Ga0164293_100060324 | F041596 | AGGA | MTNKNQTSPGENIWDDTAEETTTTKPAKASKPVQPEPDINTRDFDLEGLMTDFPTAKELERFVYDETGVVLNLKGRANKLKYQVAMDVLNGAPTDPRYIGTDNPYLDKTDLVPEDPMKELPPRDPAIPGRDQLQNEFFTAFVPHSDPEYHSQGRKMHCTFKKYKNGLITYEVIGPIEPRPYGEKIDKWGKVRPEIIRWVDPRTGEQIVQRPDGSFTPIGRRLKAMMQTFRYNNTNQWIKYVDRDFVQLDQKAAVNPWDLAE* |
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