Scaffold Ga0164293

Basic Information
Taxon OID	3300013004 Open in IMG/M
Scaffold ID	Ga0164293_10001029 Open in IMG/M
Source Dataset Name	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300013004 Open in IMG/M

Scaffold ID

Ga0164293_10001029 Open in IMG/M

Source Dataset Name

Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23340
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (37.21%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

23340

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (37.21%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.099	Long. (^o)	-89.405	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.099

Long. (^o)

-89.405

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F021296	Metagenome / Metatranscriptome	219	Y
F021537	Metagenome	218	Y
F023349	Metagenome	210	N
F078699	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0164293_100010291	F021537	N/A	MQTREQKLKLLKKTIETLWHGVSDTKEGDYPKIINLYKEVLKLNPKDRDAWENMIWLMWSMAINKKDT
Ga0164293_1000102920	F023349	GGA	MKHVLYEVTDNFDIIIKLTFENYTYLNAFIEQHTNDKKYEPKFLVLEINDEGDIDFIRTYNGTKEISKRYVVEFID*
Ga0164293_1000102931	F021296	AGGAG	MSDTKSYLELDDEPVKVQPNQSVFNPVASFQVKEGATAKQDANGNWINAIGLQSTASHRHVSKIWQDKCTPLADFVADVKEQAQFKRDIVKPESEIRLLDIDTLIDGTPVNESGLNSLRMFTDMPSSMVSFLREKSYGETLTKILNDELDSRENTWNNSGKQPREFRVRVRHDDDGNDVIRAIVSERYGVIDNHEAIDMIANSLPSLSDALASHISHDGDDMFGNVLLPDYMRSEPDSDYGVGISFRNS*
Ga0164293_1000102933	F002398	N/A	MKRVIKKMIHLLSLFLILSADPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNIIEKDKKSFFEYLDSIGIEHNKVGSYYFFIRKNK*
Ga0164293_1000102934	F002406	N/A	MENLKWIRAMSDRLRDELSKEYDDETKDLIIRAFMQGLYQQPSIVEELKSSSLIESDYFEDEESN*
Ga0164293_1000102936	F078699	AGGA	MKIGFRVVGTLEVPDDIILHEDVLNQLYALEMNDKMYMLQMCLVAESPQGEYEMVHMAEEMEEHYFKNVRYSDAEFFELD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0164293_10001029

Overview

Ecosystem & Geography

Associated Families

Sequences