Scaffold Ga0159060_1004039

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0159060_1004039

Scaffold Ga0159060_1004039

Overview

Basic Information
Taxon OID	3300012990 Open in IMG/M
Scaffold ID	Ga0159060_1004039 Open in IMG/M
Source Dataset Name	Tailings pond microbial communities from Northern Alberta -TP6_2010 BML May 2015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	McGill University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3855
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Wastewater Microbial Communities From Base Mine Lake, Ft. Mcmurray, Alberta, Canada - Surface, May 2015

Source Dataset Sampling Location
Location Name	Canada: Alberta
Coordinates	Lat. (^o)	57.02	Long. (^o)	-111.55	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006545	Metagenome / Metatranscriptome	370	Y
F012773	Metagenome / Metatranscriptome	277	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0159060_10040395	F006545	GAG	MKVRDAAKLFEKYDKRTTKAMSEHNKAGGEVRKPVRSTKGASRADQYDRAKFIYRKAAQALTANHPLKDKDGNPTPAALQFKRWAAKVPQNEADLRELKSLGARLKERYKPD*
Ga0159060_10040398	F012773	AGG	MIGLLGGGKEMAEKGDGLLEDECPLATQDETINKGNKQKAILTANYGPSEGEKMCGNCEYGEKMKKCGLGKDEVFCGIFEFKCKSSNVCDAWDTAEEYED*

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