NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134077_10104872

Scaffold Ga0134077_10104872


Overview

Basic Information
Taxon OID3300012972 Open in IMG/M
Scaffold IDGa0134077_10104872 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1097
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010965Metagenome / Metatranscriptome297Y
F048291Metagenome / Metatranscriptome148Y
F074854Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0134077_101048721F048291GAGMDLTSAAARKLAGKSSRRQFFKFLGVGSLGAGLFLTGTKVSLGAIQGCVGCGGGPCNPCGSP
Ga0134077_101048722F010965GGAMDLANIAARSLARRSSRRQFFKFLGAGTLGTGLFLTRTGVSLGAVTSCVGCGGGPCNPCFSPATLCENVAGGQYKCKTCQQGGGCPTGCITSGEWFCCLTTGRVGCRFRCSECNCGPNGNCNDPACHCFTNTAIPCTPRLHSGDQPCACPPVEAPIPSLAS*
Ga0134077_101048723F074854GGAGGMKDGAIYLLSRQVKGDHGESYMQNVTVFANSATQAKSLVDDQFAALRKSNGARDLAYQKLPEFSVEKVSLDVYKMITAGITTY*
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