NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164298_10523989

Scaffold Ga0164298_10523989


Overview

Basic Information
Taxon OID3300012955 Open in IMG/M
Scaffold IDGa0164298_10523989 Open in IMG/M
Source Dataset NameUnamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)797
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Mt. Pleasant research farm, Cornell University, New York
CoordinatesLat. (o)42.4531Long. (o)-76.3842Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025713Metagenome / Metatranscriptome200Y
F091817Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0164298_105239891F025713GAGVYVKHLTSLEFLTYLALITVAVVSVWSMVPGRAPPVREEPFSGEGIGAHDAKLWKYFLAGGGFLVLGTVHMALKNLPPVAEWLARAGYAGHLVRDLSNTHVMIVGGGTLIATGICWYALPRVLRRPLASNGLAQCAFWFTAVGLLVFYIALVGTGIAMGRLVADGWAYQAAKAHMGNWYRVPVGI
Ga0164298_105239892F091817AGAAGGMAGEQERGRRRRLRPARPLYGYRDIGAAGARHSRKAVVRAWLILAAMLLIYAAVMLTIYAVEPGLR*
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