NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164298_10000907

Scaffold Ga0164298_10000907


Overview

Basic Information
Taxon OID3300012955 Open in IMG/M
Scaffold IDGa0164298_10000907 Open in IMG/M
Source Dataset NameUnamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8625
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Mt. Pleasant research farm, Cornell University, New York
CoordinatesLat. (o)42.4531Long. (o)-76.3842Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005661Metagenome / Metatranscriptome393Y
F006886Metagenome / Metatranscriptome362Y
F058553Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0164298_1000090712F058553AGGAGMAQTRAVMPSKFVPLADELLATTGASDYSTLIGILLSRYGKHLLNTWEIANCPQAAAIQQPIAQQSIAQPETFTPMEF*
Ga0164298_100009078F006886N/AMYQQEFDASEFGSDFDYLNAGTPEQFKPTQTQKVDEISGIERFWNLTGNLGEFGAYFSGGLAASLIIRGIPALIPAAVILVPGIGLGLAIFTASSKGSAQVRALLILIAIGTALIAGNWDAWLAWIIANSQMLIFSGALIVITFGFVGTQIWSKLSNVK*
Ga0164298_100009079F005661AGCAGMMQKIRVAQTPGAATIKREFDYESGPLTPEMVNAKGRQAKILELQKQLRTAYNRHDAKARSNEVEIERLTLEAVEFGLTDALQIKKYVAKAIAAGAKYDQNIINLTQKLQHELGLIKVEGASTQTLQNMDFRQRLLLIKANHQAKGQIQQNGFQQSLKAIQASPQQAIAMQAKRSAFNNYINAKDFDPVPAVPGASGAGNSGMGNNSKGLLDGLLGFFSGRN*
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