| Basic Information | |
|---|---|
| Taxon OID | 3300012953 Open in IMG/M |
| Scaffold ID | Ga0163179_10258664 Open in IMG/M |
| Source Dataset Name | Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1360 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | North Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | 34.876 | Long. (o) | -13.1352 | Alt. (m) | Depth (m) | 80 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003020 | Metagenome / Metatranscriptome | 513 | Y |
| F015532 | Metagenome / Metatranscriptome | 254 | Y |
| F023621 | Metagenome | 209 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0163179_102586641 | F015532 | AGGAG | VNLSKDNKGVRKEIPNRMMSATFALPIDGRRVVGILDYVASDSGLTPMAFWIKLKPTDSYLDRELRASGKLISRCMQHGESLK |
| Ga0163179_102586642 | F023621 | GGTGG | VDEIRRNHMSITDKRIDNVMKAMRKAKDYDMKVIWNDKLQKLFEIRKRKAYERLEHKARMVH* |
| Ga0163179_102586643 | F003020 | AGGAGG | MPDISKFKSVSVSTDTHSKLLSLAQNRFEVPVSVQKVIEFLLEKEIKKKNGRSNGKRRS* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |