NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163179_10162372

Scaffold Ga0163179_10162372


Overview

Basic Information
Taxon OID3300012953 Open in IMG/M
Scaffold IDGa0163179_10162372 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1680
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean
CoordinatesLat. (o)34.876Long. (o)-13.1352Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002412Metagenome / Metatranscriptome561Y
F004715Metagenome / Metatranscriptome427Y
F005467Metagenome / Metatranscriptome400Y
F018084Metagenome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0163179_101623721F005467N/AMNYYYVMCQKGSLVHRCYVRLDPESADILHDALDENYDLCQVCDVRKSQVDLDILI*
Ga0163179_101623722F002412N/AMLVRTLILYVAMTVCALAFHENTFAVFELREQLQMLYLNMWELLHQLEYVTAEQRAVVYAEIEDIKQQIIQTIDLLIRHDQAQHP*
Ga0163179_101623723F018084GGAMVKTALIIIAIFVVPGTIAGLVSSYRAGQKPHRELYLILKKFAQQKNK*
Ga0163179_101623725F004715AGGAMIPYTDDEMKWISKSKKKRRSNQTADGQPPREDSRMYTRAWGIKTTIEVDGKEYVVPVQL
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