NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163179_10032734

Scaffold Ga0163179_10032734


Overview

Basic Information
Taxon OID3300012953 Open in IMG/M
Scaffold IDGa0163179_10032734 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3505
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameNorth Atlantic Ocean
CoordinatesLat. (o)34.876Long. (o)-13.1352Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000413Metagenome / Metatranscriptome1169Y
F004488Metagenome / Metatranscriptome436Y
F018008Metagenome / Metatranscriptome237Y
F028002Metagenome / Metatranscriptome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0163179_1003273411F004488GGAGGMFARLRGWFEAYKKFIFESYEPPKPTIYRLGKKKFVKVKRIRTGSKSKGPYLK*
Ga0163179_100327342F000413N/AVKKFYSIKLKQFKENIPPALAETMLLDESKLVKYLWKQKALEFRYPKHKHRLDLYADEKYLMIGKLKYPDIFGNRKRMGFMELYITHKINQRMNLARGNT*
Ga0163179_100327348F018008AGGMEFLNSKKFIVMMLIVLVWIALSGCSLTEYAEKQAPHETKQEMNAEITKDMEAMDKENALDDTPGPTNFEGIADVLGCMFAPNDCPLKKRQEEQKLDR*
Ga0163179_100327349F028002AGGAGGMKKVIDEIKKHKKAMIGVAVIVAIFAWILITNEPAPVEAQ*
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