NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164241_10113474

Scaffold Ga0164241_10113474


Overview

Basic Information
Taxon OID3300012943 Open in IMG/M
Scaffold IDGa0164241_10113474 Open in IMG/M
Source Dataset NameBackyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1943
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Source Dataset Sampling Location
Location NameUSA: Emeryville, California
CoordinatesLat. (o)37.83Long. (o)-122.29Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029142Metagenome / Metatranscriptome189Y
F061827Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0164241_101134742F061827N/AMGIKDTLLGWLSSTPDKSEELEDAEADELTREYSADRADTVAGFELGGGRGDFDSDQEAPRR*
Ga0164241_101134743F029142N/AMRTLAALTAVCATALVGVVPAGTAATAPKLRLVWTQPVVVRGEAFKPGERVVVTALTSIGPKRIVVRANVRGRLGATFRLPNQPCGKAFSIRAKGSLGSRAVIAVPSAPCVPPPIR*

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