NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164242_10006490

Scaffold Ga0164242_10006490


Overview

Basic Information
Taxon OID3300012942 Open in IMG/M
Scaffold IDGa0164242_10006490 Open in IMG/M
Source Dataset NameMiracle-Growth compost microbial communities from Emeryville, California, USA - Original compost - Miracle growth compost (MG)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12857
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Compost → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Source Dataset Sampling Location
Location NameUSA: Emeryville, California
CoordinatesLat. (o)37.83Long. (o)-122.29Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005812Metagenome / Metatranscriptome389Y
F010606Metagenome / Metatranscriptome301Y

Sequences

Protein IDFamilyRBSSequence
Ga0164242_100064905F005812GAGGMTVRWAIVGAIIGAILGSVITAGSLLYISTKARQENTARELLSEVMALESLKEGWLLQGEGSQSAKLSDNPGLPETESGSRLWLLPVEIRAILDEAEWNSPPDQNYGFMQGRRVWIVRNEIVPGAPLSYSGLTQRHYPALISIAGMQELCAWIERVQIARNGGTLTDRGLAALRPYLVPLAQEDRVRALRVLLSPDARKFLDDVRSQWGKKLVAD*
Ga0164242_100064907F010606N/AMSLALPSRMVAEERERIPSGCRELADRAGLPLTLTHAEAVRAIAYLSLMSGRDPAVVRCRAAMLRR*
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