NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163109_10052881

Scaffold Ga0163109_10052881


Overview

Basic Information
Taxon OID3300012936 Open in IMG/M
Scaffold IDGa0163109_10052881 Open in IMG/M
Source Dataset NameMarine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2980
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location
Location NameCosta Rica: the Eastern Pacific
CoordinatesLat. (o)9.5025Long. (o)-92.3286Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013325Metagenome / Metatranscriptome272Y
F038691Metagenome / Metatranscriptome165Y
F059026Metagenome / Metatranscriptome134N

Sequences

Protein IDFamilyRBSSequence
Ga0163109_100528811F059026N/AMEHIKDYKLFKESLNTEKLNEAFNSSILRDFASQDGLKSRWRGNLAKDMQKFAKLAIDKISDADFTTTTPEAYWKGPDAKDPNKVGFFVDDDKGFIKWAKANKKYLPGDLSLKNISKYGVVLSVVRGGVGMWSGFAMDRGSTYSRHRKGVEDRYGVLAKDYDTRSLYNGWDGAPAPKVTRRNLIDAATRVYVLDLNSLRDKYDVSGLKQDRANSKAGATALKTAKQIKDENKARYTAILQDKAAMTDIDKAVKDSIEMLNQHIADALKKGEMDQYGNFVIGQDPRGRSIGIKDGANAIRQ
Ga0163109_100528812F038691N/AMGFHKRYIDNQQVLRLYEDGGISKIREWYTKGVDALITETGLASQVGHVISDDDWTQMGTVRQDEEIFQLIREEYGTPVVKK*
Ga0163109_100528813F013325N/AMAKEVKLNTEEKSEYTPRKMSEIIADKRAALKKNEELLRSLQTNEYDIPVGSVKLYKQIMKFLEKEADWGHTTATGLIMLYSNMKEQQPVTREKDWDGIIKLRGTSITIFWTMITSMKGKGFYAARDFVELMAAFGSDLSKVVGKVHEDNQALRENHAHMSELDQEVNHPDVILDVAIDKYNEVEEELNQLMDEVDPVVENV*
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Institute for Fundamental Biomedical Research
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