NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138257_1776324

Scaffold Ga0138257_1776324


Overview

Basic Information
Taxon OID3300012935 Open in IMG/M
Scaffold IDGa0138257_1776324 Open in IMG/M
Source Dataset NameMetatranscriptomics of polar marine prokaryotic and eukaryotic communities from Arthur Harbor ice station, Antarctica - RNA5.ICE_1m.20151110 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1505
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine → Polar Marine Prokaryotic And Eukaryotic Communities From Antarctica During Spring Seasonal Transition

Source Dataset Sampling Location
Location NameAntarctica
CoordinatesLat. (o)-64.7711Long. (o)-64.056Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001988Metagenome / Metatranscriptome607Y
F024702Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0138257_17763241F001988GGTGGMMEVIRSDFERTVSETNKAEAEAQQDHLKFTTETQMSLAEKNMAKKEKTRLKDETDENFNDASESMDSQTKILVTSIKELMELKPTCIDTGMSYADRVAMREQEIASLKKALCILGAYAEFGPDGLADAC*
Ga0138257_17763242F024702GAGMGFLQKLSVQKHEPVSNDGGRQLIVALLKGKGQELKSTLLVSLAAQVAADPFVKIKKLIQELIERLLTEAANEANQKGWCDKAMADATQNRQYAADEVEELNAKMAKLESLSAKLGEELATLATEIKDLTDAQAKADKERKAEKAENANTVSEAKAGLGAVNMAIDILDKFYKTSAKAKVDLSLEQGPMDDAPDAGFDNGEAYQGAGAESGGIIV*
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