Scaffold Ga0160423_10016779

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0160423_10016779

Scaffold Ga0160423_10016779

Overview

Basic Information
Taxon OID	3300012920 Open in IMG/M
Scaffold ID	Ga0160423_10016779 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5551
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (43.75%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater → Marine Microbial Communities From The Costa Rica Dome And Surrounding Waters

Source Dataset Sampling Location
Location Name	Costa Rica: the Eastern Pacific
Coordinates	Lat. (^o)	8.7051	Long. (^o)	-86.4906	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007770	Metagenome	345	Y
F016956	Metagenome / Metatranscriptome	243	Y
F039679	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0160423_100167792	F039679	GGA	MSAENSHLTIREDLVEEGLSVPVCFLDYKEETHVEDTATLDIDCDYCTDGEELNDWGANIIVKITDPNQKDEYGNPWKDRLAFAISADFDWN*
Ga0160423_100167795	F007770	N/A	MSGEGLSVSFRRTSMTEKSNAELLREFQKIIYASPVTRHMKWYGRDHSLDILEHGDDNRQKFEQEYVAIKDTFQFEISVYDSWHEDADIYESHEREDSFVSLAFKFASDNYLMYFSKGFPAEWIETETIDGEKCWNHFVVKPNDKNIDKICKIWHDYGMKMVQAERCHQTDEMKSSYWASARDDIKKIMEKKEYEYSS*
Ga0160423_100167798	F016956	N/A	MKIELESWRAPKEVALAIIDLALTHIKKVELNAEVKTDGDNFDYWNSYDLGDGNYVDYNIYMGEDSGEINTQTGEWEYYDSSKWSWDVACYAVDPPTKDNPYHSIDTSREHYLFSYNKNGNREVEFENE*

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