Scaffold Ga0157294_10090083

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0157294_10090083

Scaffold Ga0157294_10090083

Overview

Basic Information
Taxon OID	3300012892 Open in IMG/M
Scaffold ID	Ga0157294_10090083 Open in IMG/M
Source Dataset Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	771
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.3	Long. (^o)	-89.38	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046440	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157294_100900831	F046440	AGTAG	MDALQVDEFPQSSVAVQVPVTVYSAGHAPGVVTTLKVIVTDASQASVAVAGPKVGIAGQSIVSFGITGQVITGGVVSCTKMDA
Ga0157294_100900832	F046440	GAG	VAVQVLVTVSSAGQVPGVVTSAKVMSTTASQASVAVAKPKVGVNGQSIVSFGIKGQVMTGGVVS*
Ga0157294_100900833	F046440	N/A	GQVITGGVVSWTKIDALQVDEFPQSSVAVQVLVTVSSAGQVPGVVTSANVMLTDASQASVAVANPKVGVKGQSMVSFGITGHIITGGVVS*

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