NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157572_1128135

Scaffold Ga0157572_1128135


Overview

Basic Information
Taxon OID3300012703 Open in IMG/M
Scaffold IDGa0157572_1128135 Open in IMG/M
Source Dataset NameDystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA- GEODES074 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1705
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016243Metagenome / Metatranscriptome248N
F022593Metagenome / Metatranscriptome213N
F045532Metagenome / Metatranscriptome152N

Sequences

Protein IDFamilyRBSSequence
Ga0157572_11281352F045532AGGMEMLDLIEFPNPYRKTSFKAYLFWTGISTVANHAIANTITCIFIRTYLAMIVALILLFNKNKSIIHRLMIYLIYLEVNPRIRIIENLNYSVMVIRLGMLSMSLEQIILNPNMEIAHAIILIHLIVVAAYLPNYIDTQEAIAKTISYFI*
Ga0157572_11281353F022593N/AMNRQEELKFFRDKVEQIRRYKLANYLAKRDIADILLMEDLEAESRRSLAHNHELLERIDLLLGILEGIGELIIEVKEQEAI*
Ga0157572_11281354F016243N/AMNEAQITKIVMRLATRSKWSIEVRRDKVSQKIAEEIQRSDELNQALMELDILLDKLQKVYQEVDDVCEHLLKHYLKSEYIQMHRPSFLNTNTIEDSKTGFIKRLLEVSDSRESLKVQDSEITTHSIYHKIDPGLRIALNNNIVTLLTIDNELIDLKVIYEFLIENCENE*
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