| Basic Information | |
|---|---|
| Taxon OID | 3300012678 Open in IMG/M |
| Scaffold ID | Ga0136615_10053056 Open in IMG/M |
| Source Dataset Name | Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ288 (22.06) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2035 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Dry Valley | |||||||
| Coordinates | Lat. (o) | -78.0557 | Long. (o) | 163.7304 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002196 | Metagenome / Metatranscriptome | 584 | Y |
| F003251 | Metagenome / Metatranscriptome | 497 | Y |
| F038469 | Metagenome / Metatranscriptome | 166 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0136615_100530563 | F038469 | GGAGG | MAALRCTCEQGTNLWGEFWWIEGEHRWMFFDDEKTSETYAEQLTHCRGCGRSLERKGLRATTPSLRP* |
| Ga0136615_100530564 | F002196 | GGAG | MEHTTEDARALIRAAKELHAERHGAHTFVPGTYLPFLEAAKRTGIRSDRQRYHDALEDLEYEGAIEWDTSARYARGYKHYLITRRGLDEPGRAWGGAVREGQTRLF* |
| Ga0136615_100530565 | F003251 | GGAG | VQNKTYTTEKEAKKAAARAYRPAIVRLPNGRYGCFHAGDVLPQGARPVSRWGTNQWRAYD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |