NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157498_1006842

Scaffold Ga0157498_1006842


Overview

Basic Information
Taxon OID3300012666 Open in IMG/M
Scaffold IDGa0157498_1006842 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Surface Ice version 2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1854
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.6244481Long. (o)-80.9227115Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023292Metagenome210Y
F051701Metagenome143Y
F061801Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0157498_10068421F051701AGGAGMQVLIDLNDDQADEVLVESLKSGYQVNLNFPDEPNFYEINQAFRTLLAYYMGDKECAKYLHARAKVRKNYN
Ga0157498_10068424F023292N/AMNIDQVKEYVTTQLKSYRVKTILDNFSDSEWKQMYKQIAPTKPYETERRLIDWARHELDFFRYVLYKERHYEELLIDHACIDCLKCEDITLKERKFYIRRPIKGENNEQ*
Ga0157498_10068425F061801AGGAGMKTKAIFKSHASPSYKGYDREIYMSEYTPINKEHYRRLRFCTVVSVGINVFLLLVMVLR*
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