| Basic Information | |
|---|---|
| Taxon OID | 3300012663 Open in IMG/M |
| Scaffold ID | Ga0157203_1001006 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Indian River, Ontario, Canada - S50 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Molecular Research LP (MR DNA) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7304 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (82.61%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Warsaw, Ontario | |||||||
| Coordinates | Lat. (o) | 44.42735 | Long. (o) | -78.1359 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000447 | Metagenome / Metatranscriptome | 1128 | Y |
| F001562 | Metagenome / Metatranscriptome | 670 | Y |
| F002245 | Metagenome / Metatranscriptome | 578 | Y |
| F003690 | Metagenome / Metatranscriptome | 473 | Y |
| F004051 | Metagenome / Metatranscriptome | 455 | Y |
| F006744 | Metagenome / Metatranscriptome | 365 | Y |
| F017134 | Metagenome / Metatranscriptome | 242 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0157203_100100613 | F000447 | AGGAG | MGYIEFARINDEGVSWVDLSEATPDELFNIEIGLLNEGAFE* |
| Ga0157203_100100616 | F006744 | AGAAGG | MNLDEYKAYVIATRQASKAEALSVLSATITKSTTKEGN* |
| Ga0157203_100100617 | F001562 | GAG | MKSQLERDIEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHEDYLAELEEE* |
| Ga0157203_100100618 | F003690 | GGAG | MIPTGFELSITNEYGFELDSFLGAIYLPWHTIIITTLAVIAYKIYKRKKNK* |
| Ga0157203_10010062 | F004051 | GAGG | MTINDKLYQVGDLFTTLKSKRTGVIKEIHPQASGSVRVLLEMPNKETRWTSVSASTLAS* |
| Ga0157203_10010064 | F002245 | N/A | MKVPHTVVFEAIIDLDKIPANLLPALIALDETSITLMCKQATLHALGMSNVLPLANENNSWAEVTIKEGN* |
| Ga0157203_10010067 | F017134 | GAGG | MELFTVSCLNYEICGAQETFDNESEYEIYGDDYICAECYASEEMEFFETIGWSDSDALASAGHGMDEDY* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |