NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157203_1000646

Scaffold Ga0157203_1000646


Overview

Basic Information
Taxon OID3300012663 Open in IMG/M
Scaffold IDGa0157203_1000646 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Indian River, Ontario, Canada - S50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9915
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (30.77%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameWarsaw, Ontario
CoordinatesLat. (o)44.42735Long. (o)-78.1359Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001055Metagenome / Metatranscriptome791Y
F021297Metagenome / Metatranscriptome219Y
F092032Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0157203_100064610F092032AGGMSAQNDGVVCLYGIGAGQEASLFVQSYSVSSGFNNTGTVVDETGLTKTSRYDDRRTEISVEGVAKSSTIPVLGAKLTFTVKTASAYPGGTASVTFAGTITKVDDRGSSKGFVTVSLTAESFEGITY*
Ga0157203_100064611F001055N/AMGTRSIRHVVEATLATYLSTQTGLTSVQFLTGDSNVTQTLPKAVVLCDSASPPADLPEGLGNFSCSVRITLFSNADDTTLADHRARCAALSGNMNDVASIQAAFAATGDATCYDVSPRSEDEGIDERSWATSFAYDVLTVLPPA*
Ga0157203_10006464F021297AGGMSCSNTVTISQGNTFACTFAWTPGASGPANLLGTTLTSDFMDRSGKVYPLTVTTAGDGLSFTVQYAGSTADWLVGLGRWDIKFVFPGDTISRTEIFRVNVIDSVTV*
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