NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136633_1000279

Scaffold Ga0136633_1000279


Overview

Basic Information
Taxon OID3300012527 Open in IMG/M
Scaffold IDGa0136633_1000279 Open in IMG/M
Source Dataset NamePolar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ83 (22.06)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38395
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (73.91%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctica: Dry Valley
CoordinatesLat. (o)-78.0267Long. (o)163.8204Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008258Metagenome / Metatranscriptome336Y
F013996Metagenome / Metatranscriptome266Y

Sequences

Protein IDFamilyRBSSequence
Ga0136633_100027917F013996GAGMSRVTLILLSYLEAALLVVILSAGLFAIRRRLMVISNGLGDLGGMLATVESQHLRGLMKWVTDINGPLQVIAGVLPGIAAKAALVVRKAQGG*
Ga0136633_100027940F008258GGAGGVSSAGTTQDPIAQALEKLGSYGVPVSEIGERVSGLVGQIGALDPTEVMEQIGSIDPKQLDVGEMVGELQARFDALDPAVKVPVMVAAGFVGARVVRWIVR*

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