NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0138266_1229610

Scaffold Ga0138266_1229610


Overview

Basic Information
Taxon OID3300012412 Open in IMG/M
Scaffold IDGa0138266_1229610 Open in IMG/M
Source Dataset NameMetatranscriptomics of polar marine prokaryotic and eukaryotic communities from Palmer Station, Antarctica after 192hr light incubation - RNA24.B_192.20151118 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1950
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine → Polar Marine Prokaryotic And Eukaryotic Communities From Antarctica During Spring Seasonal Transition

Source Dataset Sampling Location
Location NameAntarctica
CoordinatesLat. (o)-64.775Long. (o)-64.053Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050919Metagenome / Metatranscriptome144Y
F057912Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0138266_12296101F057912N/AMARLSAALSFSAESKKTLKTELDMDLNVSKFNVYFPDPSFTLESARSALDRAISADPSLADLADLGAGVSIDGMRVAGVPVGVDAWVQNFVAKKARSVISDVAKLDVVSDGLIHFQLLNSCQNARMAFLGRNTPTPLLSDIMAQVDDTIVEAVCRHGTGGEHVEWTTHLRKFANLKI*
Ga0138266_12296102F050919N/AMLFQSTHEDRQGAEAPAEPGERIAQSPLQRTLTAYIMGRWAKHEGALSHISLKRSVEMLELQRAQRFPASPANPASSVFAEFFPAPSPAPSQPNVPTEKAKQMHLNWNPLGFLSDLSAHKILTRFPPDVWQAFFCRSLGAPIPKMLAHARSRTLCSCKMGIDPLGDHVLTCKQHTGAIRGHNHLMDVVANLARASKIGAVKVNHRVS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.