NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134059_1413168

Scaffold Ga0134059_1413168


Overview

Basic Information
Taxon OID3300012402 Open in IMG/M
Scaffold IDGa0134059_1413168 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_2 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)992
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001127Metagenome / Metatranscriptome769Y
F010847Metagenome / Metatranscriptome298Y

Sequences

Protein IDFamilyRBSSequence
Ga0134059_14131681F010847N/AMEEYNMVSVVMIVVIGLCIGWIVWMRRRRWPTYAPAVSPEAIPRENLVIKAFAHGNACLAAEKFAEAITAFHQVLKLAPKHPHVAGRLAEVERQQHAASATPPINATI*
Ga0134059_14131682F001127GAGGMENHIEQYQAKHGGVTLHTWTDVQGWKKENFYITGVPGTPVPVWFREVLRQKHLSDIAAFPHGPSCFYE*

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