NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157138_1000157

Scaffold Ga0157138_1000157


Overview

Basic Information
Taxon OID3300012352 Open in IMG/M
Scaffold IDGa0157138_1000157 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Baxter Creek, Ontario, Canada - S37
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17942
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (81.48%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameFraserville, Ontario
CoordinatesLat. (o)44.16961Long. (o)-78.4089Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002098Metagenome / Metatranscriptome593Y
F002130Metagenome / Metatranscriptome591Y
F021992Metagenome / Metatranscriptome216Y
F102526Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0157138_100015711F002098N/ALKEFQMAFRKSADGIASQGKTKGKNLGDSGPTSKELMGGKPGKSGGGKTNADMKSMGRGLAKIAAQKRG*
Ga0157138_100015722F002130GAGGMSDKKPSSTLDTVLGYVDSPFKLFAIILMGVLAFSGYFLWQNQEFMRDAYRESKKLPEINTSRADETSAMLFKKTGASVVAIFKVNPLFNSRVLYKAYTKDGRDKSIEDIDVGLFSQNSGNNNDVIALMTNQIPCSEYRYAQSEVGLWYIEKGVGFTCRVSVPPDSHRFVGQITVGWPQQPESLEQVRFMLEIASAMLTKRGN*
Ga0157138_10001573F021992AGGAGMAMQGDVSAKHVNASGSVYASRTRVKGFSICATASAAGTLLLKDGGSGGTTLIEIDIPSNSNPNSFYVAIPQEGVLFETDVYATLTNIASVTVFYG*
Ga0157138_10001576F102526AGGAGMKHTDAKMDKGMMQKAVNKHEGRLHKGEPMTKLAKGGMASKMGAVKTAAPSRDGIATKGKTKGTMVKMARGGKTC*
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